PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146446.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 513aa    MW: 57023.1 Da    PI: 8.4003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0596118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_009146446.1  96 FVCEICNKGFQRDQNLQLHRRGH 118
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-695118No hitNo description
Gene3DG3DSA:3.30.160.601.7E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PfamPF121718.2E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM0035599138168IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.62E-6168193No hitNo description
SMARTSM00355180173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFFV  60
PEPQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK  180
KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSYITHRAF CLALAEETAR EVVTPQDQNH  240
QPNPLMIHQS SHHHHQAQPN MNISSSSSSS HNIINTLHFE TNVNVTNNCE SSSNHPHTFP  300
MKIEQQQTGD QIINYHHHGV PPWLAPQPQD RTSSNPNPSN GGGGGGGLFS LAASPVMSAT  360
ALLQKAAQMG STRTTPLPPT TDFERSHNTL TTTMASMMTS PSGFISSNNN NQVLFQDYNA  420
SGFNHHHGGG EAFDNTFSEL FRTNADTTSD KNKSGEGGGG REGLTRDFLG LRPLMSHNEI  480
LSFAGLGNCI NDAASDQLHP KPWQGTQVGS NKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122135KLKQRSNKEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146441.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_009146442.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_009146443.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_009146444.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_009146445.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_009146446.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLM4EF320.0M4EF32_BRARP; Uncharacterized protein
STRINGBra027394.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11